The definitions for the event logger.

Contains miscellaneous functions which have general usefulness.

Extends the functionality of hash tables to map keys to lists of values.

Definitions for doubly-linked lists which allow for in-place insertion and removal.

An assocext object is used to keep associations between non-overlapping extents of integers and values.

Implementation of the Swarm design pattern, which serves to harbor multiple interacting residents.

Definitions for the ligand objects, the string-analogues living within the Incubator layer of the design stack.

Implementation of the Incubator design pattern, which coordinates the interactions of ligands and processing units.

The definitions for the proteins in the Cytoplasm layer.

Implementation of the fourth layer of the Design Stack.

Contains the mapping from Monod genome to protein functional domains.

Encapsulates the subdivisions within the Cytoplasm, along with the transport mechanisms between them.

The main cell engine.

Generic command-line argument processing.

Common definitions for the tectonic plates necessary at the Monod Cell layer.

The control harness for a single Monod Cell.

This plate should be moved to plates.

Temporary placeholder for a built-to-order cell genome for testing purposes.

Definition of the generic interactive plate.

The simplest Interactive tectonic plate - it's not interactive at all.

Entry-point for the single-cell standalone executable.