Monod

graphics/MonodLogo.jpg

Table of Contents

Monod: An Introduction
1 Introduction
2 Three Design Patterns
3 The Cytoplasm and the Monod Cell
4 Monod Cultures
- 4.1 Evolution Driver
- 4.2 Cheating
5 Results and Future Projects
6 Compilation and Usage
7 Implementation Details
Appendix A Combinations
- A.1 Two Ligand Binding Sites
  - A.1.1 Without Remapping
    - A.1.1.1 Truth-table Driven Logical Functions
    - A.1.1.2 Other Logical Functions
  - A.1.2 With Remapping
    - A.1.2.1 Truth-table Driven Logical Functions
Appendix B References
Concept Index

Next: Introduction, Up: (dir)

Monod: An Introduction

This document presents Monod, a biologically-inspired computational model lending itself naturally to evolutionary techniques.

Introduction: What this project is all about and reading plan
Three Design Patterns: Bottom of the simulation stack
The Cytoplasm and the Monod Cell: Details of the full abstract model
Monod Cultures: Evolving Monod Cells
Results and Future Projects: Why we're doing this to begin with
Compilation and Usage: Try it yourself!
Implementation Details: Contribute to the project!
Combinations: Appendix with a combinatorial exploration of proteins
References
Concept Index